That seemed to do the trick! I also did a few other things just incase someone else tries this and runs into any issues. Just to give the full list I will post it below. I did what you suggested LAST
.
-I ran malwarebytes to mitigate any malware issues
-I ran Anti-virus on this as well
-I installed and older version of the converter
-I attempted to run this without just the first partition
After all of this deleting the boot files that you recommended seemed to work. Now for the win why is the windows presenting that it is not activated in my Virtual box?