This is very strange: your machine has boot.ini and BCD loader, once the BCD was introduced with Vista+ seems that your system is not clean.
2014-06-13T22:06:15.312-04:00 [03884 info 'Default'] WinPEMode is *enabled* in OSLoader, check OS for a Rootkit!
Moreover the BCD hive is not in recognized format. Having more that one boot loader confuse the Converter.
2014-06-13T22:06:15.312-04:00 [03884 warning 'Default'] ERROR: Error 13 reading Element value from key mntApi95329288030377845\Objects\{9dea862c-5cdd-4e70-acc1-f32b344d4795}\Elements\24000001
You need to delete \Boot and/or \EFI\Microsoft\Boot folders and try conversion without first partition.
HTH